Examples

This page contains fully worked examples of data analysis using pynapple with neurophysiological datasets.

• Analysing head-direction cells
  • Downloading the data
  • Parsing the data
  • Head-Direction Tuning Curves
  • Decoding

• Streaming data from Dandi
  • Prelude
  • DANDI
  • Pynapple

• Computing calcium imaging tuning curves
  • Downloading the data
  • Parsing the data
  • Plotting the activity of one neuron
  • Calcium tuning curves

• Example perievent
  • Stream the data from DANDI
  • Parsing the data
  • Peri-Event Time Histogram (PETH)
  • PETH of firing rate for NB and HB cells

• Example wavelet decomposition
  • Downloading the data
  • Selecting example
  • Plotting the LFP and Behavioural Activity
  • Getting the LFP Spectrogram
  • Getting the Wavelet Decomposition
  • Visualizing Theta Band Power
  • Visualizing High Frequency Oscillation
  • References

• Example filtering
  • Downloading the data
  • Loading the data
  • Selecting slices
  • Plotting the LFP Activity
  • Getting the Wavelet Decomposition
  • Filtering Theta
  • Computing phase
  • Finding Phase of Spikes

• Trial-aligned choice decoding in International Brain Lab data
  • Loading data
  • Trial alignment and binning
  • Decoding choice